Package: shinyMixR 0.5.3

shinyMixR: Interactive 'shiny' Dashboard for 'nlmixr2'

An R shiny user interface for the 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>) package, designed to simplify the modeling process for users. Additionally, this package includes supplementary functions to further enhances the usage of 'nlmixr2'.

Authors:Richard Hooijmaijers [aut, cre, cph], Teun Post [aut, cph], LAPP Consultants [fnd, cph], Matthew Fidler [ctb], Veerle van Leemput [ctb]

shinyMixR_0.5.3.tar.gz
shinyMixR_0.5.3.zip(r-4.7-any)shinyMixR_0.5.3.zip(r-4.6-any)shinyMixR_0.5.3.zip(r-4.5-any)
shinyMixR_0.5.3.tgz(r-4.6-any)shinyMixR_0.5.3.tgz(r-4.5-any)
shinyMixR_0.5.3.tar.gz(r-4.7-any)shinyMixR_0.5.3.tar.gz(r-4.6-any)
shinyMixR_0.5.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
shinyMixR/json (API)

# Install 'shinyMixR' in R:

install.packages('shinyMixR', repos = c('https://richardhooijmaijers.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/richardhooijmaijers/shinymixr/issues

Pkgdown/docs site:https://richardhooijmaijers.github.io

On CRAN:

5.85 score 12 stars 39 scripts 431 downloads 41 exports 121 dependencies

Last updated from:a8d9012fca. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	213
source / vignettes	OK	298
linux-release	OK	224
macos-release	OK	157
macos-oldrel	OK	120
windows-devel	OK	151
windows-release	OK	257
windows-oldrel	OK	158
wasm-release	OK	191

Exports:adpt_meta create_proj exploreplot fit_plot get_meta get_proj gof_plot incr_mdl module_dataexplore_server module_dataexplore_ui module_edit_server module_edit_ui module_fitplots_server module_fitplots_ui module_gof_server module_gof_ui module_metadata_server module_metadata_ui module_overview_server module_overview_ui module_pt_server module_pt_ui module_reports_server module_reports_ui module_run_server module_run_ui module_scripts_server module_scripts_ui module_settings_server module_settings_ui myalert numfmt overview par_table run_nmx run_shinymixr shinymixr_gadget sigdigs theme_shinyMixR tree_overview update_inits

Dependencies:armadillo4r askpass backports base64enc BH bs4Dash bslib cachem checkmate cli collapsibleTree commonmark cpp11 cpp4r crayon crosstalk curl data.table data.tree digest dparser dplyr DT evaluate farver fastmap fontawesome fresh fs generics ggplot2 glue gridExtra gtable highr htmltools htmlwidgets httpuv httr inline isoband jquerylib jsonlite knitr L0Learn labeling later lattice lazyeval lbfgsb3c lifecycle lotri magrittr MASS Matrix memoise mime minqa mirai n1qn1 nanonext nlme nlmixr2data nlmixr2est numDeriv openssl otel patchwork pillar pkgconfig plotly plyr PreciseSums promises ps purrr qs2 R3port R6 rappdirs RColorBrewer Rcpp RcppArmadillo RcppEigen RcppParallel RcppTrust reshape2 rex rlang rmarkdown rstudioapi rxode2 rxode2ll S7 sass scales shiny shinyAce shinyjs shinyWidgets sitmo sourcetools StanHeaders stringfish stringi stringr symengine sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite waiter whisker withr xfun xtable yaml

Introduction to the shinyMixR package

Rendered fromgetting_started.Rmdusingknitr::rmarkdown

Last update: 2024-09-16
Started: 2023-05-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Adapt meta information inside a nlmixr UIF	adpt_meta
Creates a new project	create_proj
Function to create plot from data exploration app	exploreplot
Create fit plot	fit_plot
Get the meta data out of a model function	get_meta
Read in and update model results in project object	get_proj
Create goodness of fit plots	gof_plot
Increments a model name	incr_mdl
Data exploration module for server	module_dataexplore_server
Data exploration module for UI	module_dataexplore_ui
Editor module for server	module_edit_server
Editor module for UI	module_edit_ui
Fit plots module for server	module_fitplots_server
Fit plots module for UI	module_fitplots_ui
GOF plots module for server	module_gof_server
GOF plots module for UI	module_gof_ui
meta data module for server	module_metadata_server
metadata module for UI	module_metadata_ui
Overview module for server	module_overview_server
Overview module for UI	module_overview_ui
Parameter table module for server	module_pt_server
Parameter table module for UI	module_pt_ui
Reporting module for server	module_reports_server
Reporting module for UI	module_reports_ui
Run model module for server	module_run_server
Run model module for UI	module_run_ui
Run script module for server	module_scripts_server
Run script module for UI	module_scripts_ui
Settings module for server	module_settings_server
Settings module for UI	module_settings_ui
wrapper function for sweetalert in shinywidgets	myalert
set significant digits without rounding higher numbers	numfmt
Creates model overview	overview
Create parameter table	par_table
Runs a nlmixr model	run_nmx
Creates and run the interface	run_shinymixr
Rstudio gadget to select project and start app	shinymixr_gadget
set significant digits without rounding higher numbers	sigdigs
theme for ggplot output in the shinyMixR package	theme_shinyMixR
Creates tree overview of models	tree_overview
Update initial estimates from a final model run	update_inits