Package: shinyMixR 0.5.0

shinyMixR: Interactive 'shiny' Dashboard for 'nlmixr2'

An R shiny user interface for the 'nlmixr2' (Fidler et al (2019) <doi:10.1002/psp4.12445>) package, designed to simplify the modeling process for users. Additionally, this package includes supplementary functions to further enhances the usage of 'nlmixr2'.

Authors:Richard Hooijmaijers [aut, cre, cph], Teun Post [aut, cph], LAPP Consultants [fnd, cph], Matthew Fidler [ctb], Veerle van Leemput [ctb]

shinyMixR_0.5.0.tar.gz
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shinyMixR.pdf |shinyMixR.html✨
shinyMixR/json (API)
NEWS

# Install 'shinyMixR' in R:
install.packages('shinyMixR', repos = c('https://richardhooijmaijers.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/richardhooijmaijers/shinymixr/issues

On CRAN:

6.58 score 11 stars 19 scripts 19 downloads 41 exports 173 dependencies

Last updated 8 days agofrom:8e3cf7129c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winOKNov 18 2024
R-4.5-linuxOKNov 18 2024
R-4.4-winOKNov 18 2024
R-4.4-macOKNov 18 2024
R-4.3-winOKNov 18 2024
R-4.3-macOKNov 18 2024

Exports:adpt_metacreate_projexploreplotfit_plotget_metaget_projgof_plotincr_mdlmodule_dataexplore_servermodule_dataexplore_uimodule_edit_servermodule_edit_uimodule_fitplots_servermodule_fitplots_uimodule_gof_servermodule_gof_uimodule_metadata_servermodule_metadata_uimodule_overview_servermodule_overview_uimodule_pt_servermodule_pt_uimodule_reports_servermodule_reports_uimodule_run_servermodule_run_uimodule_scripts_servermodule_scripts_uimodule_settings_servermodule_settings_uimyalertnumfmtoverviewpar_tablerun_nmxrun_shinymixrshinymixr_gadgetsigdigstheme_shinyMixRtree_overviewupdate_inits

Dependencies:askpassassertthatbackportsbase64encBHbinombitbit64bitopsbootbs4DashbslibcachemcellrangercheckmateclassclassIntclicliprclustercollapsibleTreecolorspacecommonmarkcpp11cpp11armadillocrayoncrosstalkcurldata.tabledata.treeDerivDescToolsdigestdparserdplyrDTe1071evaluateExactexpmfansifarverfastmapfontawesomeforcatsforeignFormulafreshfsgenericsggplot2ggtextgldgluegridExtragridtextgtablehavenhighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvhttrinlineisobandjpegjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallbfgsb3clifecyclelmomlotrimagrittrmarkdownMASSMatrixmemoisemgcvmimeminpack.lmminqamunsellmvtnormn1qn1nlmenlmixr2nlmixr2datanlmixr2estnlmixr2extranlmixr2plotnnetnumDerivopensslpanderpatchworkpillarpkgconfigplotlyplyrpngPreciseSumsprettyunitsprogresspromisesproxypspurrrqsR3portR6RApiSerializerappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppParallelRCurlreadrreadxlrematchreshape2rexrlangrmarkdownrootSolverpartrstudioapirxode2rxode2llsassscalesshinyshinyAceshinyjsshinyWidgetssitmosourcetoolsStanHeadersstringfishstringistringrsurvivalsymenginesystibbletidyrtidyselecttinytextzdbutf8vctrsviridisviridisLitevpcvroomwaiterwhiskerwithrxfunxgxrxml2xtableyaml

Introduction to the shinyMixR package

Rendered fromgetting_started.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2024-09-16
Started: 2023-05-17

Readme and manuals

Help Manual

Help pageTopics
Adapt meta information inside a nlmixr UIFadpt_meta
Creates a new projectcreate_proj
Function to create plot from data exploration appexploreplot
Create fit plotfit_plot
Get the meta data out of a model functionget_meta
Read in and update model results in project objectget_proj
Create goodness of fit plotsgof_plot
Increments a model nameincr_mdl
Data exploration module for servermodule_dataexplore_server
Data exploration module for UImodule_dataexplore_ui
Editor module for servermodule_edit_server
Editor module for UImodule_edit_ui
Fit plots module for servermodule_fitplots_server
Fit plots module for UImodule_fitplots_ui
GOF plots module for servermodule_gof_server
GOF plots module for UImodule_gof_ui
meta data module for servermodule_metadata_server
metadata module for UImodule_metadata_ui
Overview module for servermodule_overview_server
Overview module for UImodule_overview_ui
Parameter table module for servermodule_pt_server
Parameter table module for UImodule_pt_ui
Reporting module for servermodule_reports_server
Reporting module for UImodule_reports_ui
Run model module for servermodule_run_server
Run model module for UImodule_run_ui
Run script module for servermodule_scripts_server
Run script module for UImodule_scripts_ui
Settings module for servermodule_settings_server
Settings module for UImodule_settings_ui
wrapper function for sweetalert in shinywidgetsmyalert
set significant digits without rounding higher numbersnumfmt
Creates model overviewoverview
Create parameter tablepar_table
Runs a nlmixr modelrun_nmx
Creates and run the interfacerun_shinymixr
Rstudio gadget to select project and start appshinymixr_gadget
set significant digits without rounding higher numberssigdigs
theme for ggplot output in the shinyMixR packagetheme_shinyMixR
Creates tree overview of modelstree_overview
Update initial estimates from a final model runupdate_inits